Uses of Interface org.snpsift.annotate.DbMarker (SnpSift 5.2 API)

Packages that use DbMarker

Package

Description

org.snpsift.annotate

org.snpsift.fileIterator

Uses of DbMarker in org.snpsift.annotate

Classes in org.snpsift.annotate that implement DbMarker

Modifier and Type

Class

Description

class

DbVcf

Use a VCF file as a database for annotations A VCF database consists of a VCF file and an index.

class

DbVcfMem

Loads a VCF file into memory.

class

DbVcfSorted

Use an uncompressed sorted VCF file as a database for annotations Note: Assumes that the VCF database file is sorted and uncompressed.

class

DbVcfTabix

Use a bgzip-compressed, tabix indexed VCF file as a database for annotations
Uses of DbMarker in org.snpsift.fileIterator

Classes in org.snpsift.fileIterator that implement DbMarker

Modifier and Type

Class

Description

class

DbNsfp

DbNSFP database: Reference https://sites.google.com/site/jpopgen/dbNSFP