Uses of Enum Class
jebl.evolution.trees.TreeBuilderFactory.Method
Packages that use TreeBuilderFactory.Method
Package
Description
Provides classes and interfaces for pairwise alignment of two sequences.
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Uses of TreeBuilderFactory.Method in jebl.evolution.align
Methods in jebl.evolution.align with parameters of type TreeBuilderFactory.MethodModifier and TypeMethodDescriptionAlignmentTreeBuilderFactory.build(List<Sequence> seqs, TreeBuilderFactory.Method method, MultipleAligner aligner, ProgressListener progress, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable) AlignmentTreeBuilderFactory.build(List<Sequence> seqs, TreeBuilderFactory.Method method, PairwiseAligner aligner, ProgressListener progressListener) Will use model F84 for nucleotides and Jukes-Cantor for amino acidAlignmentTreeBuilderFactory.build(List<Sequence> seqs, TreeBuilderFactory.Method method, PairwiseAligner aligner, ProgressListener progressListener, TreeBuilderFactory.DistanceModel model) AlignmentTreeBuilderFactory.build(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener) AlignmentTreeBuilderFactory.build(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable) -
Uses of TreeBuilderFactory.Method in jebl.evolution.trees
Methods in jebl.evolution.trees that return TreeBuilderFactory.MethodModifier and TypeMethodDescriptionstatic TreeBuilderFactory.MethodReturns the enum constant of this class with the specified name.static TreeBuilderFactory.Method[]TreeBuilderFactory.Method.values()Returns an array containing the constants of this enum class, in the order they are declared.Methods in jebl.evolution.trees with parameters of type TreeBuilderFactory.MethodModifier and TypeMethodDescriptionstatic ClusteringTreeBuilderClusteringTreeBuilder.getBuilder(TreeBuilderFactory.Method method, DistanceMatrix distances) A factory method to create a ClusteringTreeBuilderstatic ClusteringTreeBuilderTreeBuilderFactory.getBuilder(TreeBuilderFactory.Method method, DistanceMatrix distances) static booleanTreeBuilderFactory.isRootedMethod(TreeBuilderFactory.Method method)