Uses of Class
jebl.evolution.sequences.NucleotideState
Packages that use NucleotideState
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Uses of NucleotideState in jebl.evolution.sequences
Fields in jebl.evolution.sequences declared as NucleotideStateModifier and TypeFieldDescriptionstatic final NucleotideStateNucleotides.A_STATEstatic final NucleotideStateNucleotides.B_STATEstatic final NucleotideStateNucleotides.C_STATEstatic final NucleotideState[]Nucleotides.CANONICAL_STATESDeprecated.static final NucleotideState[]Nucleotides.COMPLEMENTARY_STATESDeprecated.static final NucleotideStateNucleotides.D_STATEstatic final NucleotideStateNucleotides.G_STATEstatic final NucleotideStateNucleotides.GAP_STATEstatic final NucleotideStateNucleotides.H_STATEstatic final NucleotideStateNucleotides.K_STATEstatic final NucleotideStateNucleotides.M_STATEstatic final NucleotideStateNucleotides.N_STATEstatic final NucleotideStateNucleotides.R_STATEstatic final NucleotideStateNucleotides.S_STATEstatic final NucleotideState[]Nucleotides.STATESDeprecated.static final NucleotideStateNucleotides.T_STATEstatic final NucleotideStateNucleotides.UNKNOWN_STATEstatic final NucleotideStateNucleotides.V_STATEstatic final NucleotideStateNucleotides.W_STATEstatic final NucleotideStateNucleotides.Y_STATEMethods in jebl.evolution.sequences that return NucleotideStateModifier and TypeMethodDescriptionstatic NucleotideState[]Utils.complement(NucleotideState[] sequence) static NucleotideStateNucleotides.getComplementaryState(NucleotideState state) static NucleotideStateNucleotides.getGapState()static NucleotideStateNucleotides.getState(char code) static NucleotideStateNucleotides.getState(int index) static NucleotideStatestatic NucleotideStateNucleotides.getUnknownState()static NucleotideState[]Utils.reverseComplement(NucleotideState[] sequence) static NucleotideState[]Codons.toNucleotides(CodonState state) static NucleotideState[]Codons.toNucleotides(State[] states) static NucleotideState[]Nucleotides.toStateArray(byte[] indexArray) static NucleotideState[]Nucleotides.toStateArray(String sequenceString) Methods in jebl.evolution.sequences that return types with arguments of type NucleotideStateMethods in jebl.evolution.sequences with parameters of type NucleotideStateModifier and TypeMethodDescriptionstatic NucleotideState[]Utils.complement(NucleotideState[] sequence) static NucleotideStateNucleotides.getComplementaryState(NucleotideState state) static CodonStateCodons.getState(NucleotideState nucleotide1, NucleotideState nucleotide2, NucleotideState nucleotide3) GeneticCode.getTranslation(NucleotideState nucleotide1, NucleotideState nucleotide2, NucleotideState nucleotide3) Returns the state associated with AminoAcid represented by the three nucleotides.static booleanNucleotides.isGap(NucleotideState state) static booleanNucleotides.isUnknown(NucleotideState state) static NucleotideState[]Utils.reverseComplement(NucleotideState[] sequence)