7d37fcdc34759b168800da482c256106 *CHANGES
bf58558d930a7bf1cbf4c101ca487ae1 *DESCRIPTION
7708d8730a81452dec0dd44f1e22b02b *NAMESPACE
5378a33e854a62f60339085ed56d8cb4 *R/AllGenerics.R
97b76b78071e324c6caf15e8ee1fdcf7 *R/functions-crlmm.R
b2f166b0bf26e39fa19560d9c023ec01 *R/functions-snprma.R
286a51c928b4f986c3805af77a7a105f *R/justCRLMM.R
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e12dd59e7b3d21b97ebc1dbd585fb54f *R/methods-ExpressionFeatureSet.R
3ee2bbfb8f56ea68b2e7b78ba1d7fc0c *R/methods-ExpressionSet.R
040c46f1a08ddcbe611802f534ecac44 *R/methods-FeatureSet.R
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0a7c66aea7beb97c33eade8a59ddae4a *R/methods-GenericArrays.R
e311908d48553e961ca486b680d39364 *R/methods-HtaFeatureSet.R
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933ddbca5c52ec0c020bb2a387104eb9 *R/methods-SnpFeatureSet.R
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0a8eb007fa6df7921a63fa35f6f98520 *R/methods-genotype.R
2971ed81b57f10c25e1226435a519d2a *R/methods-normalization.R
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4d37d858547a863ea094176e570ffd1c *R/read.celfiles.R
107434f7e07f2dcd8e1ab87252ad50ab *R/read.xysfiles.R
db9e02dbc922a42429b77a917964927d *R/todo-snp.R
9c478d458f669b203c874cebb017322e *R/utils-general.R
a6e6d1b2b484e44f9b6e0f7ee64d5322 *R/utils-selectors.R
c474b7805593ee33a27635bdd7269732 *R/zzz.R
aecea929ad2288c95ec947b88e94eaaf *README.md
83cdc5966fafbec1dedbb39980f6b04d *TODO.org
cad9de9e7becdfb05af1b9f8b6a8baba *build/vignette.rds
f54f9c9d60a9fdbf3f964485fc686e68 *cleanup
f54f9c9d60a9fdbf3f964485fc686e68 *cleanup.win
05174453f245ca630cd01c9ea6496b60 *inst/CITATION
35c4a8fafe852be5f50df45b80231556 *inst/NEWS.Rd
0f930f60aa933477f61877d1b951f6e0 *inst/doc/oug.Rnw
a844a87b0f3e0c950d5d1681e1973328 *inst/doc/oug.pdf
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6fd1016da69a920c46ddb839f79cc87d *inst/scripts/oligoVignette.bib
facf6293c6b783dbac026aa18bb1eb12 *inst/scripts/oug.Rnw
a844a87b0f3e0c950d5d1681e1973328 *inst/scripts/oug.pdf
9362bb9bffc0fe68a09daff9eedfb4a4 *inst/scripts/primer.Rnw
b73d71f021c5eb85a3b60ce5ed2a3baf *inst/scripts/primer.pdf
234be9fc0c55bd65120bb346eae810ca *inst/unitTests/fids_ref0.rda
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c56b56cca7954f8bed99337acc3b3964 *inst/unitTests/gen_selector0.R
7ae4f77ca793613004b2f2f58c1377e9 *inst/unitTests/i0.rda
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2005572a24bae2c58c53b020822a06a9 *man/Index-methods.Rd
2f1143688f0cedd3ca4e64c6afc43668 *man/IntensityMatrix-methods.Rd
58423baffc5aaef5f6d7cba6ff2733af *man/MAplot-methods.Rd
4f3083d30e266b326c015944f2635e50 *man/Sequences-methods.Rd
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a383313f0b9aafcfbfff7730a162f2ba *man/basicPLM.Rd
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5e9d1f2749f9baee7fa9ca17d70b21e9 *man/coordinates.Rd
a9a87bd515dfebcab7becb60886692c1 *man/crlmm.Rd
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8a99cb1bf6aef479f430838a31b719ec *man/getAffinitySplineCoefficients.Rd
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8692e72aaeedf9c9210d6495200455b9 *man/getNetAffx.Rd
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4ee2ba42f12333121d418053222cb2e8 *man/getPlatformDesign.Rd
fb811eb490219e2aa3a1476b6cfb0375 *man/getProbeInfo.Rd
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d8db35376041a37cf02a240f111d9629 *man/image.Rd
377686f37c735adec8680b0a4f9ad6a7 *man/justSNPRMA.Rd
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3c64b53dd8dd779ee0d80ef69fc75b5e *man/oligo-package.Rd
2003dc32825479f9a6143fd551875576 *man/oligoDefunct.Rd
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0698f43212b022c5e1c4e53b9082e544 *man/pmAllele.Rd
381353c0919f63165d3315d18daee4a6 *man/pmFragmentLength.Rd
8bc36153729c6b1db627c44efbab19ad *man/pmPosition.Rd
9d7a179213bfb79b416657276e3f27b9 *man/pmStrand.Rd
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026f4f0543535a65b4a01265b7af51a4 *man/probeNames.Rd
d547380d5eb4f0a0a801b2d4fed3af1c *man/read.celfiles.Rd
6c990fb1324222cbfd150f284f08ace8 *man/read.xysfiles.Rd
6b5b9a1e43f3d96ca1f396e2ad05fcf7 *man/readSummaries.Rd
6647b280e0f8342cd9cdf65c9bf15756 *man/rma-methods.Rd
284082c2011992bb3a36f794be5e8d87 *man/runDate.Rd
71e711f147f91a4c07fe0a1ee212d1da *man/sequenceDesignMatrix.Rd
2c7fde14697293879228312c46552775 *man/snprma.Rd
612a630c1fd1ba1603e621efa4f2f35f *src/DABG.c
615295b4399f910e03a4ed3f96f84dc9 *src/Makevars
012807dc554c809c2ceec302a3c812c7 *src/Makevars.win
88ccecf7185eea4a4a05e0700287c285 *src/ParserGzXYS.c
d1a538b30430b9fab2ef7630e3778980 *src/ParserXYS.c
56ab1bd30a388e28b8e09a6f8ded8741 *src/baseProfile.c
36c360d1f2672b5085fb4e501688172f *src/basecontent.c
e27d58f2c910431e92d9c6c19daa0652 *src/chipbackground.c
5a0ca8aa0c31ee8ddc901aff29f8b062 *src/mas5calls.c
f342cdecbffbf650051271f3941bff75 *src/rma2.c
2500d579fb42f0cb935cf797cd22984b *src/rma_common.c
29aa92807b22bb271676c54a99076b97 *src/rma_common.h
0d554d7438b2d14323bd61bfe8ebbc8b *src/trimmed.c
c4f20e2c580d5b8f889f02f6c374fbd8 *tests/doRUnit.R
5f5c60f328489b0f6759a4ce463fc1da *vignettes/Makefile
0f930f60aa933477f61877d1b951f6e0 *vignettes/oug.Rnw
